Hot questions for BioConductor

Top 10 R Open Source / BioConductor
Categories Question List
Using BioConductor in biomart Annotate positions using biomaRt
Get hgnc_symbol/gene_name from ensembl_gene_id
Query genes within regions
How can I convert gene symbol to Ensembl ID and uniprot_swissprot in R?
Using BioConductor in data.table Releveling factor to facilitate use as nested factor in DESeq2 model in R
background subtraction in a table
Problems installing data.table for R
Using BioConductor in fasta Convert/transform an abundance (OTU) table/data.frame (to a fasta file) in R
extract/parse large multifasta into alignments using table (csv, tsv)
subset a DNAStringSet by subpattern and remove subpattern in R
How can I extract sequences from a FASTA file for each of the intervals defined in a BED file using R?
Random subsequence fasta sequence and change sequence name
Using BioConductor in genome Estimating distance difference between rows (genetic markers)
Concatenating positions into genomic segments
p.adjust with n < than number of tests
Proteomics: Create a MSnSet class file with MSnbase
LiftOver in R (error)
Using BioConductor in genomicranges Simulate random positions from a list of intervals
Merging adjacent bins with same property in GenomicRanges object
GenomicRanges: C stack usage ... is too close to the limit
Get ranges for synonymous and non-synonymous nucleotide positions within a codon separately
Unique coordinates using GenomicRanges
Using BioConductor in heatmap Binary Data heatmap
Problem with CoverageHeatmap (Bioconductor) function in R
Capture output of complexheatmap as a grob?
Avoid Re-Ordering of Rows and Columns in a Heatmap (r)
Using BioConductor in install.packages “Non Zero Exit Status” R 3.6.0 "Biobase"
Can't Load R DESeq2 Library, Installed All Missing Packages and Still Have Problems
Using BioConductor in install R how to install a specified version of a bioconductor package?
write a function that check whether a package has been install in R system
Install a specific release of bioconductor package
R-devel: "object 'checkCompilerOptions' not found" when installing magrittr
Error in installing flowCore package R
How do I instruct R to install all Bioconductor packages that are not already installed?
Bioconductor, R versions and local installs
Is it possible to install bioconductor package 'rain' in R Jupyter notebook?
Error when installing packages in R
unable to install R packages depending on rtracklayer R3.4.0
R, biocLite, error installing DESeq2
Install Bioconductor packages automation
R package "rgl" fails to install
'aclocal-1.14' is missing when installing R package in docker container
Cannot Install GO.db in BiocManager
Failing to install R oligo and RCurl packages on Linux CentOS 7
Installing Bioconductor highthroughputassays workflow gives rgl errors and fail to load
Can't install R package from bioconductor
Using BioConductor in matrix Issues with limma for analysis of microarray gene expression data - possibly related to design matrix
How to filter genes in matrix based on quantile cutoff?
Creating eset object from preprocessed expression matrix?
Creating a matrix from biostrings pairwisealignment BLOSUM
Design matrix for edge R analysis?
Find conserved columns in matrix
R - how to reload function (or change package priority)
Using BioConductor in ncbi How to keep Protein ID when retrieving coding sequences with rentrez
How to track which protein ID is linked to which gene ID with rentrez
Using Meta() function with variable in loop: Error unable to find an inherited method for function?
Using BioConductor in overlap Find overlapping regions and extract respective value
Concatenate individual genomic intervals into populational regions
Create a matrix to show overlaps among multiple GRanges
how to intersect and add score to column?
R, GenomicRanges: find the width of overlapping genomic ranges
Using BioConductor in plot Why am I unable to see multiple plots appear with a for loop?
ggtree plotting area not big enough
How to show chromosome position and SNP label at the same time in x axis
Draw PCA3D plot based on colnames?
Sub-grouping in a plot in R
Missing levels in legend using autoplot () + scale_color_manual () functions
Finding the coordinates from a BCV plot in edgeR
Change ggbio tracks labels to horizontal
Using BioConductor in rpy2 Modify r object with rpy2
Annotation DB has no 'select' method in rpy2
rpy2 failed to load some bioconductor packages
Using BioConductor in s4 R: when to use setGeneric or export a s4 method in the namespace
Why "$" autocompletion works for S4 class "SummarizedExperiment" from BioConductor
Any way coercing "list" to S4 "List"?
Using BioConductor in statistics How to summary statistics 2WA Post HOC?
How to apply fishers test between two data frame?
Problems using package 'minet' - could not find function mutinformation