Unable to install rJava in R 3.0 in Ubuntu 13.04
I am not able to call
rJava package in
R 3.0. I got the following message
Error: package ‘rJava’ was built before R 3.0.0: please re-install it
I am getting error when I tried to re-install
rJava package. I have provided the output of
R CMD javareconf
Java interpreter : /usr/bin/java Java version : 1.7.0_21 Java home path : /usr/lib/jvm/java-7-openjdk-i386/jre Java compiler : /usr/lib/jvm/java-7-openjdk-i386/jre/../bin/javac Java headers gen.: /usr/lib/jvm/java-7-openjdk-i386/jre/../bin/javah Java archive tool: /usr/lib/jvm/java-7-openjdk-i386/jre/../bin/jar trying to compile and link a JNI progam detected JNI cpp flags : detected JNI linker flags : gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O2 -pipe -g -c conftest.c -o conftest.o conftest.c:1:17: fatal error: jni.h: No such file or directory compilation terminated. make: *** [conftest.o] Error 1 Unable to compile a JNI program Java library path: JNI cpp flags : JNI linker flags : Updating Java configuration in /usr/lib/R Done.
I am using Ubuntu 13.04. I also tried
apt-get install r-cran-rjava which is not helping to solve the issue. Regarding jni.h there were some solution here. But, not sure how can I use the solution here.
I ran into the exact same issue. My solution was to install the openjdk-7-* via
sudo apt-get install openjdk-7-*
Followed that with
sudo R CMD javareconf
and I was then able to install rJava in R via
While perhaps not the most elegant solution it appears to have solved my problems with getting rJava to work.
Unable to install rJava in R 3.0 in Ubuntu 13.04, I ran into the exact same issue. My solution was to install the openjdk-7-* via sudo apt-get install openjdk-7-*. Followed that with sudo R CMD� Simply start by installing r-cran-rjava from terminal $ sudo apt-get install r-cran-rjava Then from R, simply run this. install.packages('rJava')
For those getting the error:
error: unable to load shared object '/some/dir/rJava/libs/rJava.so': libjvm.so: cannot open shared object file: No such file or directory
I solved the error locating the library in the system and linking them to
$sudo updatedb $locate libjvm.so /usr/lib/debug/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64/server/libjvm.so /usr/lib/debug/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64/zero/libjvm.so /usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64/jamvm/libjvm.so /usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64/server/libjvm.so /usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64/zero/libjvm.so $sudo ln -s /usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64/server/libjvm.so /usr/lib/
Unable to install rJava in R 3.0 in Ubuntu 13.04, I am not able to call rJava package in R 3.0. I got the following messageError: package 'rJava' was built before R 3.0.0: please re-install itI am� Installing the rJava package on Ubuntu is not quite as simple as most other R packages. Some quick notes on how to do it. Install the Java Runtime Environment (JRE). sudo apt-get install -y default-jre
Installing rJava from the distribution packages as proposed in this askUbuntu answer also works:
sudo apt-get install r-cran-rjava
NOTE: tried from a Debian system.
[R-sig-Debian] r-cran-rjava (ubuntu 13.04 ?) -- missing dependencies?, [R-sig-Debian] r-cran-rjava (ubuntu 13.04 ?) Previous message: [R-sig-Debian] Cannot install XML package with R 3.0 and Ubuntu 12.04� Hi! My name is Baobao Zhang and I'm a PhD student at Yale. I studied with Jay actually. It's a small world. I trying to use the package on an Ubuntu E3 AWS server and I'm having problems with rJava. The problem is that when I try to init
I was also facing same error which was on RHEL8.1 & i resolved it as follows:
yum --enablerepo=* install java-1.8*
later i ran same command which was giving me error logs of R server.
R CMD javareconf
which turns into following output.
無法在Ubuntu 13.04中的R 3.0中安裝rJava, 問題描述. 我無法在 R 3.0 中調用 rJava 程序包。我收到以下消息. Error: package ' rJava' was built before R 3.0.0: please re-install it. installing rJava. Dear R People: I am trying to install rJava on an Ubuntu 13.04 64 bit system. But the Java part is causing me fits. Here is the code: >
无法在Ubuntu 13.04中的R 3.0中安装rJava, Error: package 'rJava' was built before R 3.0.0: please re-install it make: *** [ conftest.o] Error 1 Unable to compile a JNI program Java library� Make sure R is configured with full Java support (including JDK). Run R CMD javareconf as root to add Java support to R. If you don't have root privileges, run R CMD javareconf -e to set all Java-related variables and then install rJava.
java — No se puede instalar rJava en R 3.0 en Ubuntu 13.04, No puedo llamar al paquete rJava en R 3.0. Me lleg� el siguiente mensajeError: package 'rJava' was built before R 3.0.0: please re-install it Recibo un error al� I'm trying to compile gplates from source, since there isn't currently a .deb file for 20.04 fossa yet, but it requires using qt4 and subsequently qwt for
java — �Por qu� rJava no funciona en Ubuntu 14.04 con OpenJDK 7?, Sudo apt-get install openjdk-7-jdk Sudo apt-get install r-cran-rjava error: unable to load shared object '/usr/lib/R/site-library/rJava/libs/rJava.so': libjvm.so: cannot open Estoy en Ubuntu 14.04 64 bit y estoy usando la versi�n R 3.1.0 ( 10/04/2014) - "Spring Dance" No se puede instalar rJava en R 3.0 en Ubuntu 13.04.
- Thank you. It worked. I have tried installing java yesterday.I also tried Oracle Java, but didn't work. Not sure I was installing JRE or reboot did the trick.
- no luck for me: first two steps run without error, then on
error: unable to load shared object '/home/cboettig/R/x86_64-pc-linux-gnu-library/3.0/rJava/libs/rJava.so':
libjvm.so: cannot open shared object file: No such file or directory. Any ideas?
- I ran into the same problem - didn't work. Finally found that after installing Java 1.7, I had to tell Ubuntu to use that as default - see here - using
update-java-alternatives -lto get list of java versions installed and
sudo update-java-alternatives -s java-1.7.0-openjdk-i386to default to 1.7. After this,
sudo R CMD javareconfran without error and I was able to
- For those looking at this more recently try
sudo apt-get install openjdk-8-*
- Does work for Ubuntu 18.04 (e. g. to install the R packages